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20 Aug 2012 SRA (Sequence Read Archive) is an NCBI-defined interchange format for NGS data. Then, the data can be downloaded from NCBI by anyone and extracted Copy the file to your home directory on Lonestar at TACC then 

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Computational Techniques for Life Sciences : Part of the TACC Institute Series, Immersive Archive. https://www.ncbi.nlm.nih.gov/sra/SRX2771645 Hands-on: Try downloading and extracting genome index and annotation files to a directory. 20 Sep 2019 Download SRA sequences from Entrez search results. Obtain search results; Obtain run accessions; Download sequence data files using SRA  9 Sep 2009 The purpose of this document is to explain to users how to download datasets of interest and associated metadata. While you could download the file from GEO (or just directly from SRA), it would seem easier to just remove the -Z option and allow fastq-dump  This will download the SRA file (in sra format) and then convert them to fastq file for you. If your SRA file is paired, you will still end up with a single fastq file, 

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